n5gest

用于处理 N5 文件的 CLI 工具。

使用 Rust N5 crate 编写。

$ cargo install n5gest
$ n5gest -h
n5gest = "0.4.0"
Andrew Champion <[email protected]>
Utilities for N5 files.

USAGE:
    n5gest [OPTIONS] <SUBCOMMAND>

FLAGS:
    -h, --help       Prints help information
    -V, --version    Prints version information

OPTIONS:
    -t, --threads <threads>    Number of threads for parallel processing. By default, the number of CPU
 cores is used.

SUBCOMMANDS:
    bench-read         Benchmark reading an entire dataset.
    cast               Cast an existing dataset into a new dataset with a given data type.
    crop-blocks        Crop wrongly sized blocks to match dataset dimensions at the end of a given axis.
    delete-uniform-blocks
                       Delete blocks uniformly filled with a given value, such as empty blocks.
    export             Export a sequence of image files from a series of z-sections.
    help               Prints this message or the help of the given subcommand(s)
    import             Import a sequence of image files as a series of z-sections into a 3D N5 dataset.
    import-tiff        Import a single file TIFF stack as a series of z-sections into a 3D N5 dataset
    ls                 List all datasets under an N5 root.
    map                Run simple math expressions mapping values to new datasets. For example, to clip
                       values in a dataset: `map example.n5 dataset_in example.n5 dataset_out "min(128, x)"`
                       Note that this converts back and forth to `f64` for the calculation.
    map-fold           Run simple math expressions as folds over blocks. For example, to find the
                       maximum value in a positive dataset: `map-fold example.n5 dataset 0 "max(acc, x)"`
    recompress         Recompress an existing dataset into a new dataset with a given compression.
    slice-img          Export a 2D subslice of an ND dataset to an image file. For exporting sequences of
                       images see `export`
    stat               Retrieve metadata about the number of blocks that exists and their timestamps.
    validate-blocks    Report malformed blocks.

安装选项

• 使用 cargo 编译和安装： cargo install n5gest
• 从 最新的 GitHub 发布版 下载预编译的二进制文件
• 使用 cargo-binstall 安装预编译的二进制文件： cargo binstall n5gest

开发

版本增加（包括变更日志发布部分的版本）由 cargo-release 处理，例如。

cargo release --dev-version minor

许可证

许可协议为以下之一

• Apache 许可协议 2.0，（LICENSE-APACHE 或 https://apache.ac.cn/licenses/LICENSE-2.0）
• MIT 许可协议（LICENSE-MIT 或 http://opensource.org/licenses/MIT）

任选其一。

贡献

除非你明确声明，否则任何有意提交给作品并由你包含的贡献，根据 Apache-2.0 许可证定义，应按上述方式双重许可，不附加任何额外条款或条件。