Lib.rs

Issues found

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• rust-bio-tools

  • Dependency structopt 0.3 has issues

    It has been losing active users, which may be a sign it's deprecated or obsolete. Consider replacing it with a different crate.

    structopt crate

  • No repository property

    Specify git repository URL in Cargo.toml to help users find more information, contribute, and for lib.rs to read more info.

  • Dependency approx 0.4 is significantly outdated

    Consider upgrading to 0.5.1 to get all the fixes and improvements.

    In Cargo, different 0.x versions are considered incompatible, so this is a semver-major upgrade.

    approx versions

  • Dependency bio 0.39 is significantly outdated

    Consider upgrading to 2.2.0 to get all the fixes and improvements.

    Easy way to bump dependencies: cargo install cargo-edit; cargo upgrade -i; Also check out Dependabot service on GitHub.

    bio versions

  • Dependency indicatif 0.11 is significantly outdated

    Consider upgrading to 0.17.11 to get all the fixes and improvements.

    indicatif versions

  • Dependency itertools 0.9 is significantly outdated

    Consider upgrading to 0.14.0 to get all the fixes and improvements.

    itertools versions

  • Dependency ordered-float 0.5 is significantly outdated

    Consider upgrading to 5.0.0 to get all the fixes and improvements.

    ordered-float versions

  • Dependency rand 0.7.3 is significantly outdated

    Consider upgrading to 0.9.1 to get all the fixes and improvements.

    rand versions

  • Dependency rand_core 0.5.1 is significantly outdated

    Consider upgrading to 0.9.3 to get all the fixes and improvements.

    rand_core versions

  • Dependency reqwest 0.9 is significantly outdated

    Consider upgrading to 0.12.15 to get all the fixes and improvements.

    reqwest versions

  • Dependency rocksdb 0.19 is significantly outdated

    Consider upgrading to 0.23.0 to get all the fixes and improvements.

    rocksdb versions

  • Dependency rustc-serialize 0.3 has issues

    It may not be actively developed any more. Consider changing the dependency.

    rustc-serialize crate

  • Dependency uuid 0.7 is significantly outdated

    Consider upgrading to 1.16.0 to get all the fixes and improvements.

    uuid versions

  • Imprecise dependency requirement anyhow = 1

    Cargo does not always pick latest versions of dependencies! Specify the version as anyhow = "1.0.98". If Cargo.lock ends up having an unexpectedly old version of the dependency, you might get a dependency that lacks features/APIs or important bugfixes that you depend on. This is most likely to happen when using the minimal-versions flag, used by users of old Rust versions.

    This crate does not bump semver-minor when adding new features, so to be safe you get all the features/APIs/fixes that your crate depends on, require a more specific patch version.

    anyhow versions

  • Dependency clap 2.31 is outdated

    Consider upgrading to 4.5.37 to get all the fixes and improvements.

    clap versions

  • Dependency derive-new 0.5 is outdated

    Consider upgrading to 0.7.0 to get all the fixes and improvements.

    derive-new versions

  • Dependency fern 0.5.7 is outdated

    Consider upgrading to 0.7.1 to get all the fixes and improvements.

    fern versions

  • Dependency jsonm 0.1.4 is outdated

    Consider upgrading to 0.2.0 to get all the fixes and improvements.

    jsonm versions

  • Dependency lz-str 0.1.0 is outdated

    Consider upgrading to 0.2.1 to get all the fixes and improvements.

    lz-str versions

  • Dependency rust-htslib 0.46.0 is outdated

    Consider upgrading to 0.49.0 to get all the fixes and improvements.

    rust-htslib versions

  • Dependency thiserror 1 is a bit outdated

    Consider upgrading to 2.0.12 to get all the fixes and improvements.

    thiserror versions

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["science::bio", "command-line-utilities"] to the Cargo.toml.

    Even if there are no categories that fit precisely, pick one that is least bad. You can also propose new categories in crates.io issue tracker.

    List of available categories

  • Missing keywords

    Help users find your crates. Add keywords = ["bio", "rust-bio-tools", "record"] (up to 5) to the Cargo.toml. Best keywords are alternative terms or their spellings that aren't in the name or description. Also add a keyword that precisely categorizes this crate and groups it with other similar crates.

If some of these crates are unmaintained and shouldn't be checked, yank them or add [badges.maintenance]
status = "deprecated" to their Cargo.toml.