samfilt

用 Rust 编写的序列比对/映射文件过滤工具。

安装

从源码

如果您想从源码构建 samfilt，则需要 Rust。然后您可以使用 cargo 构建所有内容

cargo install samfilt

用法

Usage: samfilt [options] <SAM file>

Options:
    -h, --help          print this help menu
        --supplementary sel|del
                        reads with supplementary alignments
        --greater_len UINT
                        reads with a greater length than UINT [0]
        --smaller_len UINT
                        reads with a smaller length than UINT [4294967295]
        --qname_input FILE
                        alignment records with QNAME being equal to one of the
                        lines in FILE
        --qname_output FILE
                        output the QNAME field of all the records in the
                        filtered SAM file (one per line)
    -o FILE             output to FILE [stdout]