Lib.rs

Issues found

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• fakit

  • Dependency noodles 0.75.0 is significantly outdated

    Consider upgrading to 0.98.0 to get all the fixes and improvements.

    In Cargo, different 0.x versions are considered incompatible, so this is a semver-major upgrade.

    noodles versions

  • Dependency noodles-fastq 0.11.0 is significantly outdated

    Consider upgrading to 0.18.0 to get all the fixes and improvements.

    noodles-fastq versions

  • Dependency rand_pcg 0.3.1 is significantly outdated

    Consider upgrading to 0.9.0 to get all the fixes and improvements.

    rand_pcg versions

  • Dependency rust-htslib 0.40.2 is significantly outdated

    Consider upgrading to 0.49.0 to get all the fixes and improvements.

    rust-htslib versions

  • Dependency bio 1.5.0 is outdated

    Consider upgrading to 2.3.0 to get all the fixes and improvements.

    Easy way to bump dependencies: cargo install cargo-edit; cargo upgrade -i; Also check out Dependabot service on GitHub.

    bio versions

  • Dependency bzip2 0.4.4 is a bit outdated

    Consider upgrading to 0.5.2 to get all the fixes and improvements.

    bzip2 versions

  • Dependency colored 2.0.4 is a bit outdated

    Consider upgrading to 3.0.0 to get all the fixes and improvements.

    colored versions

  • Dependency env_logger 0.10.0 is outdated

    Consider upgrading to 0.11.8 to get all the fixes and improvements.

    env_logger versions

  • Dependency rand 0.8.5 is a bit outdated

    Consider upgrading to 0.9.1 to get all the fixes and improvements.

    rand versions

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["science::bio"] to the Cargo.toml.

    Even if there are no categories that fit precisely, pick one that is least bad. You can also propose new categories in crates.io issue tracker.

    List of available categories

• xtab

  • Dependency rand_pcg 0.3.1 is significantly outdated

    Consider upgrading to 0.9.0 to get all the fixes and improvements.

    rand_pcg versions

  • Dependency bzip2 0.4.4 is a bit outdated

    Consider upgrading to 0.5.2 to get all the fixes and improvements.

    bzip2 versions

  • Dependency calamine 0.24.0 is outdated

    Consider upgrading to 0.27.0 to get all the fixes and improvements.

    calamine versions

  • Dependency env_logger 0.10.0 is outdated

    Consider upgrading to 0.11.8 to get all the fixes and improvements.

    env_logger versions

  • Dependency rand 0.8.5 is a bit outdated

    Consider upgrading to 0.9.1 to get all the fixes and improvements.

    rand versions

  • Dependency rust_xlsxwriter 0.64.2 is outdated

    Consider upgrading to 0.87.0 to get all the fixes and improvements.

    rust_xlsxwriter versions

  • Dependency thiserror 1.0.60 is a bit outdated

    Consider upgrading to 2.0.12 to get all the fixes and improvements.

    thiserror versions

• bamkit

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["…"] to the Cargo.toml.

    List of available categories

  • No repository property

    Specify git repository URL in Cargo.toml to help users find more information, contribute, and for lib.rs to read more info.

  • Dependency rand_pcg 0.3.1 is significantly outdated

    Consider upgrading to 0.9.0 to get all the fixes and improvements.

    rand_pcg versions

  • Dependency rust-htslib 0.40.2 is significantly outdated

    Consider upgrading to 0.49.0 to get all the fixes and improvements.

    rust-htslib versions

  • The Cargo package has no git commit information

    Before publishing a package, make sure all packaged files are committed to the repository, and there are no "dirty" files. Push this commit to crate's public repository.

    To protect against supply chain attacks similar to CVE-2024-3094, lib.rs will soon start flagging non-reproducible packages without public source code as suspicious. Currently only git repositories are supported (but may be hosted anywhere, not just GitHub). If you'd like a different SCM supported, please file a feature request.

    More info

  • Dependency colored 2.0.0 is a bit outdated

    Consider upgrading to 3.0.0 to get all the fixes and improvements.

    colored versions

  • Dependency plotly 0.8.3 is outdated

    Consider upgrading to 0.12.1 to get all the fixes and improvements.

    plotly versions

  • Dependency rand 0.8.5 is a bit outdated

    Consider upgrading to 0.9.1 to get all the fixes and improvements.

    rand versions

• gffkit

  • No repository property

    Specify git repository URL in Cargo.toml to help users find more information, contribute, and for lib.rs to read more info.

  • Dependency noodles 0.74.0 is significantly outdated

    Consider upgrading to 0.98.0 to get all the fixes and improvements.

    noodles versions

  • Dependency bio 1.6.0 is outdated

    Consider upgrading to 2.3.0 to get all the fixes and improvements.

    bio versions

  • Dependency bzip2 0.4.4 is a bit outdated

    Consider upgrading to 0.5.2 to get all the fixes and improvements.

    bzip2 versions

  • Dependency env_logger 0.10.0 is outdated

    Consider upgrading to 0.11.8 to get all the fixes and improvements.

    env_logger versions

  • Dependency thiserror 1.0.61 is a bit outdated

    Consider upgrading to 2.0.12 to get all the fixes and improvements.

    thiserror versions

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["science::bio"] to the Cargo.toml.

    List of available categories

• seqio

  • No repository property

    Specify git repository URL in Cargo.toml to help users find more information, contribute, and for lib.rs to read more info.

  • Published crate doesn't match its repository

    Partially verified 9 files (includes 2 Cargo-generated).

    Fetched https://github.com/sharkloc/seqio.git 682ed86c8458649ec591cfa489c8fc34373384c2.

    Checked on 2024-07-28

    This check is experimental.

    Forum thread

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["compression"] to the Cargo.toml.

    List of available categories

  • Missing keywords

    Help users find your crates. Add keywords = ["io", "seqio", "compression", "introduction", "fqreader"] (up to 5) to the Cargo.toml. Best keywords are alternative terms or their spellings that aren't in the name or description. Also add a keyword that precisely categorizes this crate and groups it with other similar crates.

• fqkit

  • Dependency env_logger 0.10.2 is outdated

    Consider upgrading to 0.11.8 to get all the fixes and improvements.

    env_logger versions

• vcfkit

  • No repository property

    Specify git repository URL in Cargo.toml to help users find more information, contribute, and for lib.rs to read more info.

  • Dependency rust-htslib 0.41.1 is significantly outdated

    Consider upgrading to 0.49.0 to get all the fixes and improvements.

    rust-htslib versions

  • Published crate doesn't match its repository

    Partially verified 11 files (includes 2 Cargo-generated).

    Fetched https://github.com/sharkloc/vcfkit.git 3e53c91db3890b7360388ab428e53439989dd339.

    Checked on 2024-07-28

    Forum thread

  • Dependency colored 2.0.0 is a bit outdated

    Consider upgrading to 3.0.0 to get all the fixes and improvements.

    colored versions

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["science::bio"] to the Cargo.toml.

    List of available categories

No issues found in: findex

If some of these crates are unmaintained and shouldn't be checked, yank them or add [badges.maintenance]
status = "deprecated" to their Cargo.toml.